Hi,
Well, it's really hard to say, what's happening exactly in your scene just from the provided description. Did you try other display modes to see if there's any significant difference?
It might be related to the "automatic rebuilding" of the RC object on several 3ds max events. By having the "Auto" option disabled (by setting the update mode of RailClone to "manual"), it'll be not "built" so often. Apart from directly disabling this option from the RC object, you might disable the corresponding option by maxcript: $.autoUpdate = off; or by using the RailClone Lister.
Let me mention, that using the recently introduced Proxy Cache feature would be highly recommendable for these purposes. It's very efficient - it'll load and render much faster because RailClone doesn't need to perform so many calculations to rebuild them, which is especially useful for complex styles. In theory, there shouldn't be any significant difference between the Embedded / External mode though the Embedded might be a bit faster.
Big thanks for any further feedback.
Best regards,