I'm afraid there is not other workaround for this problem, except not using meters as scene units.
This bug is caused by the Max boolean function, which we use for the clipping operations. Probably because these problems, Autodesk included in Max other boolean functions that work much better (as ProBoolean), but unfortunately they are not available for third-party plugins.
We are working to find an alternative to the Max booleans, to solve this issue completely.
I apologize by the problems.